2024

• Yang S, Wang Y, Huang S, Jiang C, Ye C (2024) Temporal oscillation of phospholipids in the yeast metabolic cycle. Submitted.

• Qiu H*, Miao C*, Ye C (2024) An adaptive organelle triad capsules lipid droplets for dynamic regulation. Under review.

• Zhu Y*, Tong X*, Xue J*, Qiu H, Zheng D, Ye C (2024) Phospholipid biosynthesis modulates nucleotide metabolism and reductive capactive. Nat. Chem. Biol.  Accept in principle

• Xue J and Ye C (2024) The role of lipoylation in mitochondrial adaptation to methionine restriction. BioEssays. e2300218.

• Zhang L, Zhao J, Lam SM, Chen L, Gao Y, Wang W, Xu Y, Tan T, Yu H, Zhang M, Liao X, Wu M, Zhang T, Huang J, Li B, Zhou QD, Shen N, Lee HJ, Ye C, Li D, Shui G, Zhang J (2024) Low-input lipidomics reveals lipid metabolism remodeling during early mammalian embryo development. Nat Cell Biol. 26(2):278-293.

• Wang A, Chen C, Mei C, Liu S, Xiang C, Fang W, Zhang F, Xu Y, Chen S, Zhang Q, Bai X, Lin A, Neculai D, Xia B, Ye C, Zou J, Liang T, Feng XH, Li X, Shen C, Xu P (2024) Innate immunity sensing of lysosomal dysfunction drives multiple lysosomal storage disorders. Nat Cell Biol. 26(2):219-234.

• Hu G, Gu L, Wang R, Jian Q, Lv K, Xia M, Lai M, Shen T, Hu J, Yang S, Ye C, Zhang X, Wang Y, Xu X, Zhang F (2024) Ethanolamine as a biomarker and biomarker-based therapy for diabetic retinopathy in glucose-well-controlled diabetic patients. Sci Bull. doi:10.1016/j.scib.2023.12.053

• Liu S, Han S, Wang C, Chen H, Xu Q, Feng S, Wang Y, Yao J, Zhou Q, Tang X, Lin L, Hu L, Davidson AJ, Yang B, Ye C, Yang F, Mao J, Tong C, Chen J, Jiang H (2024) MAPK1 mediates MAM disruption and mitochondrial dysfunction in diabetic kidney disease via the PACS-2-dependent mechanism. Int J Bio Sci. 20(2):569-584.

2023

• Fang W*, Jiang L*, Zhu Y*, Yang S, Qiu H, Cheng J, Liang Q, Tu Z, Ye C (2023) Methionine restriction constrains lipoylation and activates mitochondria for nitrogenic synthesis of amino acids. Nature Commun.14:2504. [link]
  

• Zhang Y*, Zhou Y*, Fang W*, Zhu H, Cao W, Ye C#, Zhang D#, Lee HJ# (2023) Spatial sterol metabolism unveiled by stimulated Raman imaging. Front. Chem. 11:1166313.

  
  

2022

• Zhou Q, Hao B, Cao X, Gao L, Yu Z, Zhao Y, Zhu M, Zhong G, Chi F, Dai X, Mao J, Zhu Y, Rong P, Chen L, Bai X, Ye C, Chen S, Liang T, Li L, Feng XH, Tan M, Zhao B (2022) Energy sensor AMPK gamma regulates translation via phosphatase PPP6C independent of AMPK alpha. Mol. Cell 82(24):4700-4711.

• Yang S, Xue J, Ye C# (2022) Protocol for rapid and accurate quantification of phospholipids using LC-MS. STAR Protocols 3(4):101769. [link]

• Li S*, Han S*, Zhang Q, Zhu Y, Zhang H, Wang J, Zhao Y, Zhao J, Su L, Li L, Zhou D, Ye C, Feng XH, Liang T, Zhao B (2022). FUNDC2 promotes liver tumorigenesis by inhibiting MFN1-mediated mitochondrial fusion. Nat. Commun. 13(1):3486.

• Peng X, Wang X, Shao X, Wang Y, Feng S, Wang C, Ye C, Chen J, Jiang H (2022). Serum Metabolomics Benefits Discrimination Kidney Disease Development in Type 2 Diabetes Patients. Front Med. 9:819311.

• Fang W*, Zhu Y*, Yang S, Tong X, Ye C# (2022) Reciprocal regulation of phosphatidylcholine synthesis and H3K36 methylation programs metabolic adaptation. Cell Reports 39(2):11067 [link]
  

• Zhao JS#, Shi S, Qu HY, Keckesova Z, Cao ZJ, Yang LX, Yu X, Feng L, Shi Z, Krakowiak J, Mao RY, Shen YT, Fan YM, Fu TM, Ye C, Xu  D, Gao X, You J, Li W, Liang T#, Lu Z#, Feng YX# (2022) Glutamine  synthetase licenses APC/C-mediated mitotic progression to drive cell  growth. Nat. Metab. 4(2):239-253.

  
  

2021

• Huang LJ, Mao XT, Li YY, Liu DD, Fan KQ, Liu RB, Wu TT, Wang HL, Zhang Y, Yang B, Ye C,  Zhong JY, Chai RJ, Cao Q, Jin J (2021) Multiomics analyses reveal a  critical role of selenium in controlling T cell differentiation in  Crohn's disease. Immunity 54(8):1728-1744.
  

• Wang W, Ren S, Lu Y, Chen X, Qu J, Ma X, Deng Q, Hu Z, Jin Y, Zhou Z, Ge W, Zhu Y, Yang N, Li Q, Pu J, Chen G, Ye C,  Wang H, Zhao X, Liu Z, Zhu S (2021). Inhibition of Syk promotes  chemical reprogramming of fibroblasts via metabolic rewiring and H2S production. EMBO J. 40 (11) e106771.

2020

• Li Y, Lou W, Grevel A, Böttinger L, Liang Z, Ji J, Patil VA, Liu J, Ye C, Hüttemann M, Becker T, Greenberg ML (2020) Cardiolipin-deficient cells have decreased levels of the iron-sulfur biogenesis protein frataxin. J. Biol. Chem. 295(33):11928-11937.

• Haws SA, Yu D, Ye C,  Wille CK, Nguyen LC, Krautkramer KA, Tomasiewicz JL, Yang SE, Miller  BR, LiuWH, Igarashi K, Sridharan R, Tu BP, Cryns VL, Lamming DW, Denu JM  (2020) Methyl-metabolite depletion elicits adaptive responses to support heterochromatin stability and epigenetic persistence. Mol. Cell 78(2):210-223. [link]
  

2013-2019 (Before join the LSI)

• Kuang Z, Wang Y, Li Y, Ye C, Ruhn KA, BehrendtCL, Olson EN, Hooper LV (2019) The intestinal microbiota programs diurnal rhythms in host metabolism throughhistone deacetylase 3. Science 365(6460):1428-1434. [link]
  

• Ye C, Sutter BM, Wang Y, Kuang Z, Zhao X, Yu Y, Tu BP (2019) Demethylation  of the protein phosphatase PP2A promotes demethylation of histones to  enable their function as a methyl group sink.Mol. Cell 73(6):1115-1126. [link]
  

• Ye C and Tu BP (2018) Sink into the Epigenome: Histones as repositories that influence cellular metabolism. Trends Endocrinol Metab. 29(9):626-637. [link]
  

• Ye C, Sutter BM, Wang Y, Kuang Z, Tu BP (2017) A metabolic function for phospholipid and histone methylation.Mol. Cell 66(2):180-193. [link]
  

• Yu W*, Ye C*, and Greenberg ML (2016) Inositol hexakisphosphate kinase 1 (IP6K1) regulates inositol synthesis in mammalian cells. J. Biol.Chem. 291(20):10437-10444.

• Ye C, Shen Z, and Greenberg ML (2015) Cardiolipin remodeling: a regulatory hub for modulating cardiolipin metabolism and function. J. Bioenerg. Biomembr. 48(2):113-123.

• Shen Z, Ye C, McCain K, and Greenberg ML (2015) The role of cardiolipin in cardiovascular health. BioMed Res. Int. 2015:891707.

• Ye C and Greenberg ML (2015) Inositol synthesis regulates activation of GSK-3α in neuronal cells. J. Neurochem.133(2): 73-83.

• Ye C*, Lou W*, Li Y, Chatzispyrou IA, Hüttemann M, Lee I, Houtkooper RH, Vaz FM, Chen S, Greenberg ML (2014) Deletion  of the cardiolipin-specific phospholipase Cld1 rescues growth and  lifespan defects in the tafazzin mutant: Implications for Barth  syndrome. J. Biol. Chem. 289(6):3114-25.

• Ye C, Bandara WMMS, Greenberg ML (2013) Regulation of inositol metabolism is fine-tuned by inositol pyrophosphates in Saccharomyces cerevisiae. J. Biol. Chem. 288(34):24898-90

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